Detailed information of SNP:
|
SNP ID:
sf0612995929(Gbrowse)
Chromosome: chr06 Position: 12995929 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1384 | 72.98% | 27.02% |
| All Indica | 769 | 52.80% | 47.20% |
| All Japonica | 496 | 99.80% | 0.20% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 362 | 52.76% | 47.24% |
| Indica II | 198 | 35.86% | 64.14% |
| Indica Intermediate | 209 | 68.90% | 31.10% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 67 | 100.00% | 0.00% |
| Group VI/Aromatic | 12 | 91.67% | 8.33% |
| Intermediate | 40 | 77.50% | 22.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0612995929 | C->T | LOC_Os06g22380(LOC_Os06g22380.1) | INTRON |