Detailed information of SNP:
|
SNP ID:
sf0613001492(Gbrowse)
Chromosome: chr06 Position: 13001492 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1419 | 53.91% | 46.09% |
| All Indica | 799 | 90.74% | 9.26% |
| All Japonica | 497 | 1.41% | 98.59% |
| Aus | 67 | 8.96% | 91.04% |
| Indica I | 375 | 91.73% | 8.27% |
| Indica II | 213 | 94.84% | 5.16% |
| Indica Intermediate | 211 | 84.83% | 15.17% |
| Temperate Japonica | 335 | 1.19% | 98.81% |
| Tropical Japonica | 94 | 1.06% | 98.94% |
| Japonica Intermediate | 68 | 2.94% | 97.06% |
| Group VI/Aromatic | 14 | 42.86% | 57.14% |
| Intermediate | 42 | 50.00% | 50.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0613001492 | T->C | INTERGENIC | None |