Detailed information of SNP:
|
SNP ID:
sf0613010484(Gbrowse)
Chromosome: chr06 Position: 13010484 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1412 | 64.31% | 35.69% |
| All Indica | 795 | 96.60% | 3.40% |
| All Japonica | 497 | 9.86% | 90.14% |
| Aus | 67 | 85.07% | 14.93% |
| Indica I | 372 | 96.51% | 3.49% |
| Indica II | 212 | 96.23% | 3.77% |
| Indica Intermediate | 211 | 97.16% | 2.84% |
| Temperate Japonica | 335 | 7.46% | 92.54% |
| Tropical Japonica | 94 | 15.96% | 84.04% |
| Japonica Intermediate | 68 | 13.24% | 86.76% |
| Group VI/Aromatic | 12 | 83.33% | 16.67% |
| Intermediate | 41 | 58.54% | 41.46% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0613010484 | T->C | INTERGENIC | None |