Detailed information of SNP:
|
SNP ID:
sf0613033068(Gbrowse)
Chromosome: chr06 Position: 13033068 |
Major allele:
T
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1392 | 67.17% | 32.83% |
| All Indica | 799 | 98.25% | 1.75% |
| All Japonica | 474 | 11.39% | 88.61% |
| Aus | 67 | 86.57% | 13.43% |
| Indica I | 375 | 98.13% | 1.87% |
| Indica II | 213 | 97.65% | 2.35% |
| Indica Intermediate | 211 | 99.05% | 0.95% |
| Temperate Japonica | 319 | 9.09% | 90.91% |
| Tropical Japonica | 91 | 16.48% | 83.52% |
| Japonica Intermediate | 64 | 15.62% | 84.38% |
| Group VI/Aromatic | 12 | 100.00% | 0.00% |
| Intermediate | 40 | 65.00% | 35.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0613033068 | C->T | INTERGENIC | None |