Detailed information of SNP:
|
SNP ID:
sf0613033658(Gbrowse)
Chromosome: chr06 Position: 13033658 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1415 | 63.04% | 36.96% |
| All Indica | 796 | 94.22% | 5.78% |
| All Japonica | 497 | 9.86% | 90.14% |
| Aus | 67 | 83.58% | 16.42% |
| Indica I | 374 | 95.99% | 4.01% |
| Indica II | 213 | 91.55% | 8.45% |
| Indica Intermediate | 209 | 93.78% | 6.22% |
| Temperate Japonica | 335 | 8.06% | 91.94% |
| Tropical Japonica | 94 | 14.89% | 85.11% |
| Japonica Intermediate | 68 | 11.76% | 88.24% |
| Group VI/Aromatic | 13 | 92.31% | 7.69% |
| Intermediate | 42 | 59.52% | 40.48% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0613033658 | T->C | LOC_Os06g22430(LOC_Os06g22430.1) | INTRON |