Detailed information of SNP:
|
SNP ID:
sf0613037696(Gbrowse)
Chromosome: chr06 Position: 13037696 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1393 | 97.27% | 2.73% |
| All Indica | 797 | 98.87% | 1.13% |
| All Japonica | 487 | 95.89% | 4.11% |
| Aus | 55 | 90.91% | 9.09% |
| Indica I | 375 | 98.67% | 1.33% |
| Indica II | 212 | 98.11% | 1.89% |
| Indica Intermediate | 210 | 100.00% | 0.00% |
| Temperate Japonica | 328 | 95.73% | 4.27% |
| Tropical Japonica | 92 | 96.74% | 3.26% |
| Japonica Intermediate | 67 | 95.52% | 4.48% |
| Group VI/Aromatic | 13 | 69.23% | 30.77% |
| Intermediate | 41 | 100.00% | 0.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0613037696 | T->C | LOC_Os06g22430(LOC_Os06g22430.1) | INTRON |