Detailed information of SNP:
|
SNP ID:
sf0613039750(Gbrowse)
Chromosome: chr06 Position: 13039750 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1409 | 50.82% | 49.18% |
| All Indica | 795 | 81.89% | 18.11% |
| All Japonica | 497 | 1.61% | 98.39% |
| Aus | 67 | 46.27% | 53.73% |
| Indica I | 373 | 80.70% | 19.30% |
| Indica II | 213 | 89.20% | 10.80% |
| Indica Intermediate | 209 | 76.56% | 23.44% |
| Temperate Japonica | 335 | 1.19% | 98.81% |
| Tropical Japonica | 94 | 2.13% | 97.87% |
| Japonica Intermediate | 68 | 2.94% | 97.06% |
| Group VI/Aromatic | 11 | 54.55% | 45.45% |
| Intermediate | 39 | 51.28% | 48.72% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0613039750 | C->T | LOC_Os06g22430(LOC_Os06g22430.1) | Non-Synonymous SNP |