Detailed information of SNP:
|
SNP ID:
sf0613058000(Gbrowse)
Chromosome: chr06 Position: 13058000 |
Major allele:
T
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1418 | 58.04% | 41.96% |
| All Indica | 799 | 88.86% | 11.14% |
| All Japonica | 496 | 5.24% | 94.76% |
| Aus | 67 | 88.06% | 11.94% |
| Indica I | 375 | 89.07% | 10.93% |
| Indica II | 213 | 92.96% | 7.04% |
| Indica Intermediate | 211 | 84.36% | 15.64% |
| Temperate Japonica | 334 | 6.89% | 93.11% |
| Tropical Japonica | 94 | 0.00% | 100.00% |
| Japonica Intermediate | 68 | 4.41% | 95.59% |
| Group VI/Aromatic | 14 | 50.00% | 50.00% |
| Intermediate | 42 | 50.00% | 50.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0613058000 | C->T | INTERGENIC | None |