Detailed information of SNP:
|
SNP ID:
sf0613061564(Gbrowse)
Chromosome: chr06 Position: 13061564 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1418 | 59.31% | 40.69% |
| All Indica | 799 | 90.86% | 9.14% |
| All Japonica | 497 | 5.63% | 94.37% |
| Aus | 67 | 86.57% | 13.43% |
| Indica I | 375 | 91.73% | 8.27% |
| Indica II | 213 | 95.31% | 4.69% |
| Indica Intermediate | 211 | 84.83% | 15.17% |
| Temperate Japonica | 335 | 7.46% | 92.54% |
| Tropical Japonica | 94 | 0.00% | 100.00% |
| Japonica Intermediate | 68 | 4.41% | 95.59% |
| Group VI/Aromatic | 14 | 50.00% | 50.00% |
| Intermediate | 41 | 53.66% | 46.34% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0613061564 | T->C | INTERGENIC | None |