Detailed information of SNP:
|
SNP ID:
sf0613062811(Gbrowse)
Chromosome: chr06 Position: 13062811 |
Major allele:
T
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1405 | 52.24% | 47.76% |
| All Indica | 791 | 84.83% | 15.17% |
| All Japonica | 497 | 1.21% | 98.79% |
| Aus | 61 | 52.46% | 47.54% |
| Indica I | 371 | 84.10% | 15.90% |
| Indica II | 211 | 91.00% | 9.00% |
| Indica Intermediate | 209 | 79.90% | 20.10% |
| Temperate Japonica | 335 | 1.19% | 98.81% |
| Tropical Japonica | 94 | 0.00% | 100.00% |
| Japonica Intermediate | 68 | 2.94% | 97.06% |
| Group VI/Aromatic | 14 | 28.57% | 71.43% |
| Intermediate | 42 | 50.00% | 50.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0613062811 | C->T | INTERGENIC | None |