Detailed information of SNP:
|
SNP ID:
sf0613062819(Gbrowse)
Chromosome: chr06 Position: 13062819 |
Major allele:
T
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1396 | 55.59% | 44.41% |
| All Indica | 780 | 85.26% | 14.74% |
| All Japonica | 494 | 5.26% | 94.74% |
| Aus | 67 | 86.57% | 13.43% |
| Indica I | 364 | 84.62% | 15.38% |
| Indica II | 208 | 90.87% | 9.13% |
| Indica Intermediate | 208 | 80.77% | 19.23% |
| Temperate Japonica | 332 | 6.93% | 93.07% |
| Tropical Japonica | 94 | 0.00% | 100.00% |
| Japonica Intermediate | 68 | 4.41% | 95.59% |
| Group VI/Aromatic | 14 | 50.00% | 50.00% |
| Intermediate | 41 | 48.78% | 51.22% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0613062819 | C->T | INTERGENIC | None |