Detailed information of SNP:
|
SNP ID:
sf0613062834(Gbrowse)
Chromosome: chr06 Position: 13062834 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1360 | 57.50% | 42.50% |
| All Indica | 746 | 30.03% | 69.97% |
| All Japonica | 497 | 98.59% | 1.41% |
| Aus | 62 | 58.06% | 41.94% |
| Indica I | 348 | 31.61% | 68.39% |
| Indica II | 206 | 26.70% | 73.30% |
| Indica Intermediate | 192 | 30.73% | 69.27% |
| Temperate Japonica | 335 | 98.51% | 1.49% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 97.06% | 2.94% |
| Group VI/Aromatic | 14 | 78.57% | 21.43% |
| Intermediate | 41 | 51.22% | 48.78% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0613062834 | C->T | INTERGENIC | None |