Detailed information of SNP:
|
SNP ID:
sf0613066000(Gbrowse)
Chromosome: chr06 Position: 13066000 |
Major allele:
A
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1418 | 56.14% | 43.86% |
| All Indica | 798 | 90.23% | 9.77% |
| All Japonica | 497 | 1.41% | 98.59% |
| Aus | 67 | 61.19% | 38.81% |
| Indica I | 375 | 91.47% | 8.53% |
| Indica II | 212 | 94.81% | 5.19% |
| Indica Intermediate | 211 | 83.41% | 16.59% |
| Temperate Japonica | 335 | 1.49% | 98.51% |
| Tropical Japonica | 94 | 0.00% | 100.00% |
| Japonica Intermediate | 68 | 2.94% | 97.06% |
| Group VI/Aromatic | 14 | 42.86% | 57.14% |
| Intermediate | 42 | 52.38% | 47.62% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0613066000 | G->A | LOC_Os06g22480(LOC_Os06g22480.1) | Non-Synonymous SNP |