Detailed information of SNP:
|
SNP ID:
sf0613068323(Gbrowse)
Chromosome: chr06 Position: 13068323 |
Major allele:
A
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1419 | 57.65% | 42.35% |
| All Indica | 799 | 90.61% | 9.39% |
| All Japonica | 497 | 2.21% | 97.79% |
| Aus | 67 | 80.60% | 19.40% |
| Indica I | 375 | 91.47% | 8.53% |
| Indica II | 213 | 95.31% | 4.69% |
| Indica Intermediate | 211 | 84.36% | 15.64% |
| Temperate Japonica | 335 | 2.39% | 97.61% |
| Tropical Japonica | 94 | 0.00% | 100.00% |
| Japonica Intermediate | 68 | 4.41% | 95.59% |
| Group VI/Aromatic | 14 | 50.00% | 50.00% |
| Intermediate | 42 | 52.38% | 47.62% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0613068323 | G->A | INTERGENIC | None |