Detailed information of SNP:
|
SNP ID:
sf0613069948(Gbrowse)
Chromosome: chr06 Position: 13069948 |
Major allele:
A
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1415 | 56.11% | 43.89% |
| All Indica | 799 | 90.49% | 9.51% |
| All Japonica | 494 | 2.02% | 97.98% |
| Aus | 67 | 46.27% | 53.73% |
| Indica I | 375 | 91.20% | 8.80% |
| Indica II | 213 | 94.84% | 5.16% |
| Indica Intermediate | 211 | 84.83% | 15.17% |
| Temperate Japonica | 332 | 2.41% | 97.59% |
| Tropical Japonica | 94 | 0.00% | 100.00% |
| Japonica Intermediate | 68 | 2.94% | 97.06% |
| Group VI/Aromatic | 14 | 42.86% | 57.14% |
| Intermediate | 41 | 58.54% | 41.46% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0613069948 | G->A | INTERGENIC | None |