Detailed information of SNP:
|
SNP ID:
sf0613070384(Gbrowse)
Chromosome: chr06 Position: 13070384 |
Major allele:
T
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1410 | 56.24% | 43.76% |
| All Indica | 797 | 90.34% | 9.66% |
| All Japonica | 496 | 2.22% | 97.78% |
| Aus | 61 | 55.74% | 44.26% |
| Indica I | 374 | 90.91% | 9.09% |
| Indica II | 213 | 94.84% | 5.16% |
| Indica Intermediate | 210 | 84.76% | 15.24% |
| Temperate Japonica | 334 | 2.69% | 97.31% |
| Tropical Japonica | 94 | 0.00% | 100.00% |
| Japonica Intermediate | 68 | 2.94% | 97.06% |
| Group VI/Aromatic | 14 | 42.86% | 57.14% |
| Intermediate | 42 | 52.38% | 47.62% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0613070384 | G->T | INTERGENIC | None |