Detailed information of SNP:
|
SNP ID:
sf0613079965(Gbrowse)
Chromosome: chr06 Position: 13079965 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1341 | 50.71% | 49.29% |
| All Indica | 732 | 23.36% | 76.64% |
| All Japonica | 492 | 95.73% | 4.27% |
| Aus | 64 | 21.88% | 78.12% |
| Indica I | 337 | 21.96% | 78.04% |
| Indica II | 195 | 34.36% | 65.64% |
| Indica Intermediate | 200 | 15.00% | 85.00% |
| Temperate Japonica | 331 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 85.11% | 14.89% |
| Japonica Intermediate | 67 | 89.55% | 10.45% |
| Group VI/Aromatic | 13 | 7.69% | 92.31% |
| Intermediate | 40 | 57.50% | 42.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0613079965 | T->C | LOC_Os06g22510(LOC_Os06g22510.1) | Non-Synonymous SNP |