Detailed information of SNP:
|
SNP ID:
sf0613083326(Gbrowse)
Chromosome: chr06 Position: 13083326 |
Major allele:
A
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1410 | 56.38% | 43.62% |
| All Indica | 790 | 92.66% | 7.34% |
| All Japonica | 497 | 0.80% | 99.20% |
| Aus | 67 | 56.72% | 43.28% |
| Indica I | 369 | 92.14% | 7.86% |
| Indica II | 213 | 94.37% | 5.63% |
| Indica Intermediate | 208 | 91.83% | 8.17% |
| Temperate Japonica | 335 | 1.19% | 98.81% |
| Tropical Japonica | 94 | 0.00% | 100.00% |
| Japonica Intermediate | 68 | 0.00% | 100.00% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 42 | 50.00% | 50.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0613083326 | G->A | LOC_Os06g22520(LOC_Os06g22520.1) | Synonymous |