Detailed information of SNP:
|
SNP ID:
sf0613083782(Gbrowse)
Chromosome: chr06 Position: 13083782 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1411 | 94.33% | 5.67% |
| All Indica | 799 | 99.37% | 0.63% |
| All Japonica | 490 | 85.71% | 14.29% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 213 | 97.65% | 2.35% |
| Indica Intermediate | 211 | 100.00% | 0.00% |
| Temperate Japonica | 335 | 98.81% | 1.19% |
| Tropical Japonica | 91 | 43.96% | 56.04% |
| Japonica Intermediate | 64 | 76.56% | 23.44% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 87.80% | 12.20% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0613083782 | A->G | LOC_Os06g22520(LOC_Os06g22520.1) | Synonymous |