Detailed information of SNP:
|
SNP ID:
sf0613087824(Gbrowse)
Chromosome: chr06 Position: 13087824 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1402 | 94.65% | 5.35% |
| All Indica | 784 | 90.94% | 9.06% |
| All Japonica | 497 | 100.00% | 0.00% |
| Aus | 65 | 95.38% | 4.62% |
| Indica I | 365 | 87.67% | 12.33% |
| Indica II | 212 | 99.53% | 0.47% |
| Indica Intermediate | 207 | 87.92% | 12.08% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 97.62% | 2.38% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0613087824 | C->T | LOC_Os06g22520(LOC_Os06g22520.1) | Non-Synonymous SNP |