Detailed information of SNP:
|
SNP ID:
sf0613087864(Gbrowse)
Chromosome: chr06 Position: 13087864 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1413 | 92.71% | 7.29% |
| All Indica | 793 | 91.17% | 8.83% |
| All Japonica | 497 | 100.00% | 0.00% |
| Aus | 67 | 56.72% | 43.28% |
| Indica I | 370 | 85.41% | 14.59% |
| Indica II | 213 | 99.53% | 0.47% |
| Indica Intermediate | 210 | 92.86% | 7.14% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 92.86% | 7.14% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0613087864 | G->A | LOC_Os06g22520(LOC_Os06g22520.1) | Synonymous |