Detailed information of SNP:
|
SNP ID:
sf0613088611(Gbrowse)
Chromosome: chr06 Position: 13088611 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1125 | 71.29% | 28.71% |
| All Indica | 523 | 42.26% | 57.74% |
| All Japonica | 496 | 99.60% | 0.40% |
| Aus | 60 | 78.33% | 21.67% |
| Indica I | 247 | 42.91% | 57.09% |
| Indica II | 123 | 26.83% | 73.17% |
| Indica Intermediate | 153 | 53.59% | 46.41% |
| Temperate Japonica | 334 | 99.40% | 0.60% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 32 | 81.25% | 18.75% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0613088611 | T->C | LOC_Os06g22520(LOC_Os06g22520.1) | Synonymous |