Detailed information of SNP:
|
SNP ID:
sf0613120364(Gbrowse)
Chromosome: chr06 Position: 13120364 |
Major allele:
C
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1419 | 58.70% | 41.30% |
| All Indica | 799 | 93.62% | 6.38% |
| All Japonica | 497 | 4.83% | 95.17% |
| Aus | 67 | 61.19% | 38.81% |
| Indica I | 375 | 93.87% | 6.13% |
| Indica II | 213 | 93.90% | 6.10% |
| Indica Intermediate | 211 | 92.89% | 7.11% |
| Temperate Japonica | 335 | 1.19% | 98.81% |
| Tropical Japonica | 94 | 15.96% | 84.04% |
| Japonica Intermediate | 68 | 7.35% | 92.65% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 42 | 47.62% | 52.38% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0613120364 | G->C | INTERGENIC | None |