Detailed information of SNP:
|
SNP ID:
sf0613120903(Gbrowse)
Chromosome: chr06 Position: 13120903 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1392 | 50.29% | 49.71% |
| All Indica | 796 | 25.88% | 74.12% |
| All Japonica | 473 | 89.43% | 10.57% |
| Aus | 67 | 59.70% | 40.30% |
| Indica I | 375 | 24.53% | 75.47% |
| Indica II | 211 | 8.06% | 91.94% |
| Indica Intermediate | 210 | 46.19% | 53.81% |
| Temperate Japonica | 335 | 97.61% | 2.39% |
| Tropical Japonica | 79 | 55.70% | 44.30% |
| Japonica Intermediate | 59 | 88.14% | 11.86% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 40.48% | 59.52% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0613120903 | A->G | INTERGENIC | None |