Detailed information of SNP:
|
SNP ID:
sf0613123493(Gbrowse)
Chromosome: chr06 Position: 13123493 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1417 | 53.00% | 47.00% |
| All Indica | 797 | 26.22% | 73.78% |
| All Japonica | 497 | 95.37% | 4.63% |
| Aus | 67 | 47.76% | 52.24% |
| Indica I | 374 | 24.60% | 75.40% |
| Indica II | 213 | 10.33% | 89.67% |
| Indica Intermediate | 210 | 45.24% | 54.76% |
| Temperate Japonica | 335 | 98.81% | 1.19% |
| Tropical Japonica | 94 | 85.11% | 14.89% |
| Japonica Intermediate | 68 | 92.65% | 7.35% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 52.38% | 47.62% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0613123493 | G->A | INTERGENIC | None |