Detailed information of SNP:
|
SNP ID:
sf0613123808(Gbrowse)
Chromosome: chr06 Position: 13123808 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1409 | 54.51% | 45.49% |
| All Indica | 796 | 26.26% | 73.74% |
| All Japonica | 492 | 98.17% | 1.83% |
| Aus | 66 | 59.09% | 40.91% |
| Indica I | 374 | 24.60% | 75.40% |
| Indica II | 213 | 10.33% | 89.67% |
| Indica Intermediate | 209 | 45.45% | 54.55% |
| Temperate Japonica | 335 | 98.81% | 1.19% |
| Tropical Japonica | 91 | 97.80% | 2.20% |
| Japonica Intermediate | 66 | 95.45% | 4.55% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 56.10% | 43.90% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0613123808 | G->A | INTERGENIC | None |