Detailed information of SNP:
|
SNP ID:
sf0613132736(Gbrowse)
Chromosome: chr06 Position: 13132736 |
Major allele:
A
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1416 | 62.64% | 37.36% |
| All Indica | 796 | 94.47% | 5.53% |
| All Japonica | 497 | 5.23% | 94.77% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 373 | 94.10% | 5.90% |
| Indica II | 213 | 93.90% | 6.10% |
| Indica Intermediate | 210 | 95.71% | 4.29% |
| Temperate Japonica | 335 | 1.19% | 98.81% |
| Tropical Japonica | 94 | 15.96% | 84.04% |
| Japonica Intermediate | 68 | 10.29% | 89.71% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 66.67% | 33.33% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0613132736 | T->A | INTERGENIC | None |