Detailed information of SNP:
|
SNP ID:
sf0613151107(Gbrowse)
Chromosome: chr06 Position: 13151107 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1407 | 65.17% | 34.83% |
| All Indica | 799 | 97.50% | 2.50% |
| All Japonica | 485 | 6.19% | 93.81% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 98.13% | 1.87% |
| Indica II | 213 | 96.24% | 3.76% |
| Indica Intermediate | 211 | 97.63% | 2.37% |
| Temperate Japonica | 326 | 2.15% | 97.85% |
| Tropical Japonica | 92 | 16.30% | 83.70% |
| Japonica Intermediate | 67 | 11.94% | 88.06% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 64.29% | 35.71% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0613151107 | A->G | INTERGENIC | None |