Detailed information of SNP:
|
SNP ID:
sf0613152085(Gbrowse)
Chromosome: chr06 Position: 13152085 |
Major allele:
T
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1417 | 58.65% | 41.35% |
| All Indica | 798 | 91.23% | 8.77% |
| All Japonica | 497 | 5.23% | 94.77% |
| Aus | 67 | 59.70% | 40.30% |
| Indica I | 374 | 91.98% | 8.02% |
| Indica II | 213 | 93.43% | 6.57% |
| Indica Intermediate | 211 | 87.68% | 12.32% |
| Temperate Japonica | 335 | 1.19% | 98.81% |
| Tropical Japonica | 94 | 15.96% | 84.04% |
| Japonica Intermediate | 68 | 10.29% | 89.71% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 41 | 58.54% | 41.46% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0613152085 | C->T | LOC_Os06g22620(LOC_Os06g22620.1) | INTRON |