Detailed information of SNP:
|
SNP ID:
sf0613159614(Gbrowse)
Chromosome: chr06 Position: 13159614 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1317 | 73.04% | 26.96% |
| All Indica | 719 | 52.71% | 47.29% |
| All Japonica | 496 | 100.00% | 0.00% |
| Aus | 49 | 89.80% | 10.20% |
| Indica I | 335 | 48.06% | 51.94% |
| Indica II | 189 | 42.86% | 57.14% |
| Indica Intermediate | 195 | 70.26% | 29.74% |
| Temperate Japonica | 334 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 39 | 74.36% | 25.64% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0613159614 | C->T | INTERGENIC | None |