Detailed information of SNP:
|
SNP ID:
sf0613193985(Gbrowse)
Chromosome: chr06 Position: 13193985 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1418 | 87.66% | 12.34% |
| All Indica | 798 | 86.72% | 13.28% |
| All Japonica | 497 | 93.56% | 6.44% |
| Aus | 67 | 47.76% | 52.24% |
| Indica I | 374 | 83.96% | 16.04% |
| Indica II | 213 | 92.96% | 7.04% |
| Indica Intermediate | 211 | 85.31% | 14.69% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 71.28% | 28.72% |
| Japonica Intermediate | 68 | 92.65% | 7.35% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 95.24% | 4.76% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0613193985 | G->A | INTERGENIC | None |