Detailed information of SNP:
|
SNP ID:
sf0613222541(Gbrowse)
Chromosome: chr06 Position: 13222541 |
Major allele:
A
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1415 | 65.16% | 34.84% |
| All Indica | 798 | 96.49% | 3.51% |
| All Japonica | 496 | 10.48% | 89.52% |
| Aus | 67 | 88.06% | 11.94% |
| Indica I | 374 | 96.26% | 3.74% |
| Indica II | 213 | 95.31% | 4.69% |
| Indica Intermediate | 211 | 98.10% | 1.90% |
| Temperate Japonica | 335 | 4.48% | 95.52% |
| Tropical Japonica | 94 | 29.79% | 70.21% |
| Japonica Intermediate | 67 | 13.43% | 86.57% |
| Group VI/Aromatic | 13 | 84.62% | 15.38% |
| Intermediate | 41 | 73.17% | 26.83% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0613222541 | G->A | LOC_Os06g22730(LOC_Os06g22730.1) | Non-Synonymous SNP |