Detailed information of SNP:
|
SNP ID:
sf0613262499(Gbrowse)
Chromosome: chr06 Position: 13262499 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1371 | 55.87% | 44.13% |
| All Indica | 752 | 26.06% | 73.94% |
| All Japonica | 497 | 99.20% | 0.80% |
| Aus | 66 | 60.61% | 39.39% |
| Indica I | 353 | 28.61% | 71.39% |
| Indica II | 193 | 19.69% | 80.31% |
| Indica Intermediate | 206 | 27.67% | 72.33% |
| Temperate Japonica | 335 | 98.81% | 1.19% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 54.76% | 45.24% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0613262499 | C->T | LOC_Os06g22780(LOC_Os06g22780.1) | INTRON |