Detailed information of SNP:
|
SNP ID:
sf0613287090(Gbrowse)
Chromosome: chr06 Position: 13287090 |
Major allele:
G
Minor allele: C Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1211 | 77.21% | 22.79% |
| All Indica | 604 | 56.13% | 43.87% |
| All Japonica | 496 | 99.80% | 0.20% |
| Aus | 62 | 96.77% | 3.23% |
| Indica I | 284 | 52.46% | 47.54% |
| Indica II | 155 | 44.52% | 55.48% |
| Indica Intermediate | 165 | 73.33% | 26.67% |
| Temperate Japonica | 334 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 35 | 77.14% | 22.86% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0613287090 | G->C | INTERGENIC | None |