Detailed information of SNP:
|
SNP ID:
sf0613293537(Gbrowse)
Chromosome: chr06 Position: 13293537 |
Major allele:
T
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1418 | 53.95% | 46.05% |
| All Indica | 798 | 81.95% | 18.05% |
| All Japonica | 497 | 5.43% | 94.57% |
| Aus | 67 | 89.55% | 10.45% |
| Indica I | 375 | 77.07% | 22.93% |
| Indica II | 213 | 91.55% | 8.45% |
| Indica Intermediate | 210 | 80.95% | 19.05% |
| Temperate Japonica | 335 | 1.19% | 98.81% |
| Tropical Japonica | 94 | 18.09% | 81.91% |
| Japonica Intermediate | 68 | 8.82% | 91.18% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 42 | 54.76% | 45.24% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0613293537 | C->T | INTERGENIC | None |