Detailed information of SNP:
|
SNP ID:
sf0613372064(Gbrowse)
Chromosome: chr06 Position: 13372064 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1190 | 50.00% | 50.00% |
| All Indica | 601 | 16.47% | 83.53% |
| All Japonica | 490 | 95.71% | 4.29% |
| Aus | 60 | 10.00% | 90.00% |
| Indica I | 280 | 15.71% | 84.29% |
| Indica II | 160 | 15.62% | 84.38% |
| Indica Intermediate | 161 | 18.63% | 81.37% |
| Temperate Japonica | 334 | 98.80% | 1.20% |
| Tropical Japonica | 91 | 85.71% | 14.29% |
| Japonica Intermediate | 65 | 93.85% | 6.15% |
| Group VI/Aromatic | 2 | 50.00% | 50.00% |
| Intermediate | 37 | 54.05% | 45.95% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0613372064 | T->C | LOC_Os06g22900(LOC_Os06g22900.1) | INTRON |