Detailed information of SNP:
|
SNP ID:
sf0613373730(Gbrowse)
Chromosome: chr06 Position: 13373730 |
Major allele:
A
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1410 | 60.64% | 39.36% |
| All Indica | 791 | 91.78% | 8.22% |
| All Japonica | 497 | 5.23% | 94.77% |
| Aus | 67 | 95.52% | 4.48% |
| Indica I | 371 | 91.91% | 8.09% |
| Indica II | 211 | 91.00% | 9.00% |
| Indica Intermediate | 209 | 92.34% | 7.66% |
| Temperate Japonica | 335 | 1.19% | 98.81% |
| Tropical Japonica | 94 | 15.96% | 84.04% |
| Japonica Intermediate | 68 | 10.29% | 89.71% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 60.98% | 39.02% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0613373730 | G->A | LOC_Os06g22900(LOC_Os06g22900.1) | INTRON |