Detailed information of SNP:
|
SNP ID:
sf0613373760(Gbrowse)
Chromosome: chr06 Position: 13373760 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1409 | 60.54% | 39.46% |
| All Indica | 789 | 92.02% | 7.98% |
| All Japonica | 497 | 5.23% | 94.77% |
| Aus | 67 | 92.54% | 7.46% |
| Indica I | 370 | 93.78% | 6.22% |
| Indica II | 210 | 90.48% | 9.52% |
| Indica Intermediate | 209 | 90.43% | 9.57% |
| Temperate Japonica | 335 | 1.19% | 98.81% |
| Tropical Japonica | 94 | 15.96% | 84.04% |
| Japonica Intermediate | 68 | 10.29% | 89.71% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 59.52% | 40.48% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0613373760 | T->C | LOC_Os06g22900(LOC_Os06g22900.1) | INTRON |