Detailed information of SNP:
|
SNP ID:
sf0613379877(Gbrowse)
Chromosome: chr06 Position: 13379877 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1418 | 61.00% | 39.00% |
| All Indica | 798 | 92.36% | 7.64% |
| All Japonica | 497 | 5.23% | 94.77% |
| Aus | 67 | 94.03% | 5.97% |
| Indica I | 374 | 93.32% | 6.68% |
| Indica II | 213 | 93.43% | 6.57% |
| Indica Intermediate | 211 | 89.57% | 10.43% |
| Temperate Japonica | 335 | 1.19% | 98.81% |
| Tropical Japonica | 94 | 15.96% | 84.04% |
| Japonica Intermediate | 68 | 10.29% | 89.71% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 59.52% | 40.48% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0613379877 | A->G | LOC_Os06g22919(LOC_Os06g22919.4) | INTRON |
| sf0613379877 | A->G | LOC_Os06g22919(LOC_Os06g22919.3) | INTRON |
| sf0613379877 | A->G | LOC_Os06g22919(LOC_Os06g22919.1) | INTRON |