Detailed information of SNP:
|
SNP ID:
sf0613382623(Gbrowse)
Chromosome: chr06 Position: 13382623 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1409 | 61.60% | 38.40% |
| All Indica | 790 | 93.42% | 6.58% |
| All Japonica | 497 | 5.63% | 94.37% |
| Aus | 66 | 93.94% | 6.06% |
| Indica I | 369 | 95.93% | 4.07% |
| Indica II | 213 | 90.61% | 9.39% |
| Indica Intermediate | 208 | 91.83% | 8.17% |
| Temperate Japonica | 335 | 1.49% | 98.51% |
| Tropical Japonica | 94 | 17.02% | 82.98% |
| Japonica Intermediate | 68 | 10.29% | 89.71% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 61.90% | 38.10% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0613382623 | T->C | LOC_Os06g22919(LOC_Os06g22919.4) | INTRON |
| sf0613382623 | T->C | LOC_Os06g22919(LOC_Os06g22919.3) | INTRON |
| sf0613382623 | T->C | LOC_Os06g22919(LOC_Os06g22919.1) | INTRON |