Detailed information of SNP:
|
SNP ID:
sf0613388031(Gbrowse)
Chromosome: chr06 Position: 13388031 |
Major allele:
T
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1418 | 63.26% | 36.74% |
| All Indica | 799 | 95.87% | 4.13% |
| All Japonica | 497 | 5.84% | 94.16% |
| Aus | 67 | 95.52% | 4.48% |
| Indica I | 375 | 96.27% | 3.73% |
| Indica II | 213 | 95.77% | 4.23% |
| Indica Intermediate | 211 | 95.26% | 4.74% |
| Temperate Japonica | 335 | 1.49% | 98.51% |
| Tropical Japonica | 94 | 18.09% | 81.91% |
| Japonica Intermediate | 68 | 10.29% | 89.71% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 58.54% | 41.46% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0613388031 | C->T | LOC_Os06g22919(LOC_Os06g22919.2) | INTRON |
| sf0613388031 | C->T | LOC_Os06g22919(LOC_Os06g22919.4) | INTRON |
| sf0613388031 | C->T | LOC_Os06g22919(LOC_Os06g22919.3) | INTRON |
| sf0613388031 | C->T | LOC_Os06g22919(LOC_Os06g22919.1) | INTRON |