Detailed information of SNP:
|
SNP ID:
sf0613433231(Gbrowse)
Chromosome: chr06 Position: 13433231 |
Major allele:
A
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1418 | 58.89% | 41.11% |
| All Indica | 799 | 93.74% | 6.26% |
| All Japonica | 497 | 3.22% | 96.78% |
| Aus | 67 | 50.75% | 49.25% |
| Indica I | 375 | 93.60% | 6.40% |
| Indica II | 213 | 94.84% | 5.16% |
| Indica Intermediate | 211 | 92.89% | 7.11% |
| Temperate Japonica | 335 | 4.48% | 95.52% |
| Tropical Japonica | 94 | 0.00% | 100.00% |
| Japonica Intermediate | 68 | 1.47% | 98.53% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 41 | 56.10% | 43.90% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0613433231 | G->A | INTERGENIC | None |