Detailed information of SNP:
|
SNP ID:
sf0613438993(Gbrowse)
Chromosome: chr06 Position: 13438993 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1412 | 55.88% | 44.12% |
| All Indica | 792 | 93.18% | 6.82% |
| All Japonica | 497 | 0.80% | 99.20% |
| Aus | 67 | 43.28% | 56.72% |
| Indica I | 374 | 93.85% | 6.15% |
| Indica II | 208 | 93.75% | 6.25% |
| Indica Intermediate | 210 | 91.43% | 8.57% |
| Temperate Japonica | 335 | 1.19% | 98.81% |
| Tropical Japonica | 94 | 0.00% | 100.00% |
| Japonica Intermediate | 68 | 0.00% | 100.00% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 42 | 42.86% | 57.14% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0613438993 | T->C | INTERGENIC | None |