Detailed information of SNP:
|
SNP ID:
sf0613441720(Gbrowse)
Chromosome: chr06 Position: 13441720 |
Major allele:
G
Minor allele: T Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1272 | 75.63% | 24.37% |
| All Indica | 661 | 54.16% | 45.84% |
| All Japonica | 497 | 100.00% | 0.00% |
| Aus | 64 | 100.00% | 0.00% |
| Indica I | 305 | 51.15% | 48.85% |
| Indica II | 173 | 42.20% | 57.80% |
| Indica Intermediate | 183 | 70.49% | 29.51% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 36 | 80.56% | 19.44% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0613441720 | G->T | INTERGENIC | None |