Detailed information of SNP:
|
SNP ID:
sf0613448470(Gbrowse)
Chromosome: chr06 Position: 13448470 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1393 | 94.97% | 5.03% |
| All Indica | 784 | 98.21% | 1.79% |
| All Japonica | 486 | 95.27% | 4.73% |
| Aus | 67 | 56.72% | 43.28% |
| Indica I | 370 | 98.11% | 1.89% |
| Indica II | 207 | 99.03% | 0.97% |
| Indica Intermediate | 207 | 97.58% | 2.42% |
| Temperate Japonica | 327 | 100.00% | 0.00% |
| Tropical Japonica | 92 | 80.43% | 19.57% |
| Japonica Intermediate | 67 | 92.54% | 7.46% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 92.86% | 7.14% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0613448470 | C->T | LOC_Os06g23070(LOC_Os06g23070.1) | Non-Synonymous SNP |