Detailed information of SNP:
SNP ID:
sf0613450205(Gbrowse)
Chromosome: chr06 Position: 13450205 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
---|---|---|---|
All | 1418 | 64.39% | 35.61% |
All Indica | 799 | 97.25% | 2.75% |
All Japonica | 497 | 6.04% | 93.96% |
Aus | 67 | 97.01% | 2.99% |
Indica I | 375 | 97.87% | 2.13% |
Indica II | 213 | 96.24% | 3.76% |
Indica Intermediate | 211 | 97.16% | 2.84% |
Temperate Japonica | 335 | 1.49% | 98.51% |
Tropical Japonica | 94 | 19.15% | 80.85% |
Japonica Intermediate | 68 | 10.29% | 89.71% |
Group VI/Aromatic | 14 | 100.00% | 0.00% |
Intermediate | 41 | 65.85% | 34.15% |
Allele Var Effect:
SNP ID | Var | Gene | Effect/Location |
---|---|---|---|
sf0613450205 | A->G | LOC_Os06g23070(LOC_Os06g23070.1) | Non-Synonymous SNP |