Detailed information of SNP:



SNP ID: sf0613451182(Gbrowse)

Chromosome: chr06

Position: 13451182
Major allele: C

Minor allele: T

Reference allele: T

Allele Frequencies:


NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.


PopulationsPopulation SizeFrequency of C(major allele)Frequency of T(minor allele)
All1418 63.47% 36.53%
All Indica799 95.87% 4.13%
All Japonica497 5.84% 94.16%
Aus67 95.52% 4.48%
Indica I375 96.00% 4.00%
Indica II213 95.77% 4.23%
Indica Intermediate211 95.73% 4.27%
Temperate Japonica335 1.19% 98.81%
Tropical Japonica94 20.21% 79.79%
Japonica Intermediate68 8.82% 91.18%
Group VI/Aromatic14 100.00% 0.00%
Intermediate41 65.85% 34.15%

Allele Var Effect:


SNP ID Var Gene Effect/Location
sf0613451182 T->C LOC_Os06g23070(LOC_Os06g23070.1) Non-Synonymous SNP