Detailed information of SNP:
|
SNP ID:
sf0613451182(Gbrowse)
Chromosome: chr06 Position: 13451182 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1418 | 63.47% | 36.53% |
| All Indica | 799 | 95.87% | 4.13% |
| All Japonica | 497 | 5.84% | 94.16% |
| Aus | 67 | 95.52% | 4.48% |
| Indica I | 375 | 96.00% | 4.00% |
| Indica II | 213 | 95.77% | 4.23% |
| Indica Intermediate | 211 | 95.73% | 4.27% |
| Temperate Japonica | 335 | 1.19% | 98.81% |
| Tropical Japonica | 94 | 20.21% | 79.79% |
| Japonica Intermediate | 68 | 8.82% | 91.18% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 65.85% | 34.15% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0613451182 | T->C | LOC_Os06g23070(LOC_Os06g23070.1) | Non-Synonymous SNP |