Detailed information of SNP:
SNP ID:
sf0613452862(Gbrowse)
Chromosome: chr06 Position: 13452862 |
Major allele:
T
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
---|---|---|---|
All | 1418 | 64.46% | 35.54% |
All Indica | 798 | 97.37% | 2.63% |
All Japonica | 497 | 6.04% | 93.96% |
Aus | 67 | 98.51% | 1.49% |
Indica I | 374 | 98.13% | 1.87% |
Indica II | 213 | 96.24% | 3.76% |
Indica Intermediate | 211 | 97.16% | 2.84% |
Temperate Japonica | 335 | 1.49% | 98.51% |
Tropical Japonica | 94 | 19.15% | 80.85% |
Japonica Intermediate | 68 | 10.29% | 89.71% |
Group VI/Aromatic | 14 | 100.00% | 0.00% |
Intermediate | 42 | 64.29% | 35.71% |
Allele Var Effect:
SNP ID | Var | Gene | Effect/Location |
---|---|---|---|
sf0613452862 | C->T | INTERGENIC | None |