Detailed information of SNP:
|
SNP ID:
sf0613462495(Gbrowse)
Chromosome: chr06 Position: 13462495 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1415 | 93.78% | 6.22% |
| All Indica | 799 | 96.62% | 3.38% |
| All Japonica | 496 | 95.16% | 4.84% |
| Aus | 64 | 48.44% | 51.56% |
| Indica I | 375 | 96.00% | 4.00% |
| Indica II | 213 | 98.59% | 1.41% |
| Indica Intermediate | 211 | 95.73% | 4.27% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 93 | 80.65% | 19.35% |
| Japonica Intermediate | 68 | 91.18% | 8.82% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 92.86% | 7.14% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0613462495 | C->T | INTERGENIC | None |