Detailed information of SNP:
|
SNP ID:
sf0613464772(Gbrowse)
Chromosome: chr06 Position: 13464772 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1419 | 92.46% | 7.54% |
| All Indica | 799 | 96.62% | 3.38% |
| All Japonica | 497 | 94.57% | 5.43% |
| Aus | 67 | 52.24% | 47.76% |
| Indica I | 375 | 96.00% | 4.00% |
| Indica II | 213 | 98.59% | 1.41% |
| Indica Intermediate | 211 | 95.73% | 4.27% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 81.91% | 18.09% |
| Japonica Intermediate | 68 | 85.29% | 14.71% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 42 | 83.33% | 16.67% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0613464772 | C->T | LOC_Os06g23090(LOC_Os06g23090.1) | INTRON |